Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs11773775 | chr7:20665487 | G/A | 1.69E-6 | 178 | 15.47 | 15.67 | 3.67 | KM Plot |
| PAAD | rs117755082 | chr17:26909042 | T/C | 1.67E-5 | 175 | 15.48 | 16.05 | 3.67 | KM Plot |
| PAAD | rs117787641 | chr7:154686551 | C/T | 1.01E-13 | 174 | 16.05 | 12.93 | 3.43 | KM Plot |
| PAAD | rs11789010 | chr9:80129910 | C/T | 5.98E-5 | 178 | 7.77 | 15.57 | 15.62 | KM Plot |
| PAAD | rs117948248 | chr17:80759687 | C/T | 4.84E-6 | 172 | 16.12 | 12.17 | 3.67 | KM Plot |
| PAAD | rs11799389 | chr1:227323787 | G/A | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs11799850 | chr1:216281910 | T/C | 0 | 175 | 14.63 | 17 | 0.4 | KM Plot |
| PAAD | rs11800169 | chr1:227452952 | C/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs11800364 | chr1:227353932 | T/C | 4.14E-5 | 177 | 15.55 | 15.65 | 3.9 | KM Plot |
| PAAD | rs11800777 | chr1:227535532 | C/A | 1.03E-5 | 175 | 15.55 | 15.65 | 3.9 | KM Plot |
| PAAD | rs11801012 | chr1:227350198 | T/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs11801282 | chr1:227402910 | G/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs11802399 | chr1:227353753 | C/T | 4.18E-5 | 178 | 3.9 | 15.65 | 15.53 | KM Plot |
| PAAD | rs118031703 | chr17:27072693 | G/T | 1.78E-5 | 175 | 15.43 | 17.5 | 3.67 | KM Plot |
| PAAD | rs11803651 | chr1:227471650 | C/G | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |